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Metagenome-assembled genome: SRR4028167_bin.43_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075508; SRA: ERS11678737
Organism
uncultured Verrucomicrobiota bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; environmental samples
Attributes
collection date2011-03-12
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationAtlantic Ocean
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameThis study is aimed to explore the microbial lifestyle in ocean and interpret metabolic potentials using metagenome/metaproteome dataset. Furthermore, it is important to learn about various mode of energy consumption that may support marine microbes i.e. photoautotrophy, chemoautotrophy and heterotrophy.
sample nameSRR4028167_bin.43_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14075508
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:32Z
INSDC last update2023-01-03T00:32:32Z
INSDC statuspublic
Submitter IdSRR4028167_bin.43_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.14.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score88.96
completeness softwareCheckM
contamination score0.68
geographic location (latitude)-37.8305
geographic location (longitude)-41.1248
metagenomic sourcemarine metagenome
sample derived fromSAMN04579666
scientific_nameuncultured Verrucomicrobia bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4028167 of study SRP081823.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075508
ID:
32557423

BioProject Nucleotide

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