Metagenome-assembled genome: SRR5242439_bin.28_CON... - BioSample

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Result Filters

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

collection date	2014-05-01
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Pacific Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Investigating the composition of environmental DNA
sample name	SRR5242439_bin.28_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075515
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:34Z
INSDC last update	2023-01-03T00:32:34Z
INSDC status	public
Submitter Id	SRR5242439_bin.28_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	61.23
completeness software	CheckM
contamination score	1.16
geographic location (latitude)	37.0403
geographic location (longitude)	-137.3758
metagenomic source	marine metagenome
sample derived from	SAMN06314935
scientific_name	uncultured Gammaproteobacteria bacterium
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5242439 of study SRP099177.