Metagenome-assembled genome: SRR5494785_bin.101_CO... - BioSample

Metagenome-assembled genome: SRR5494785_bin.101_CONCOCT_v1.1_MAG

Organism: uncultured proteobacterium
cellular organisms; Bacteria; Pseudomonadota; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Atlantic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Microbial engines driving organic matter transformations: Marine sample from the Southern Atlantic ocean transect- Knorr_S7_td_Bottom_ad_4513_LV_A
sample name	SRR5494785_bin.101_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075529
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:37Z
INSDC last update	2023-01-03T00:32:37Z
INSDC status	public
Submitter Id	SRR5494785_bin.101_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	92.66
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	marine metagenome
sample derived from	SAMN06344109
scientific_name	uncultured proteobacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5494785 of study SRP106043.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
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