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Metagenome-assembled genome: SRR5821798_bin.55_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075552; SRA: ERS11678781
Organism
uncultured Nitrosopumilaceae archaeon
cellular organisms; Archaea; TACK group; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales; Nitrosopumilaceae; environmental samples
Attributes
collection date2011-04-04
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameMetagenomics of North Sea microbial communities with relevance to post-phytoplankton bloom & benthic-pelagic carbon-turnover from a long-term ecological research (LTER) site Helgoland
sample nameSRR5821798_bin.55_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14075552
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:18Z
INSDC last update2023-01-03T00:32:18Z
INSDC statuspublic
Submitter IdSRR5821798_bin.55_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score94.17
completeness softwareCheckM
contamination score0.49
geographic location (latitude)54.1883
geographic location (longitude)7.9
metagenomic sourcemarine metagenome
sample derived fromSAMN06266116
scientific_nameuncultured Nitrosopumilaceae archaeon
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5821798 of study SRP111779.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075552
ID:
32557467

BioProject Nucleotide

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