Metagenome-assembled genome: SRR5839047_bin.40_CON... - BioSample

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Result Filters

Organism: Candidatus Thioglobus perditus
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Candidatus Thioglobus

Attributes

collection date	2015-01-25
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Costa Rica
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Genome of Marine Group A-SAR406.
sample name	SRR5839047_bin.40_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075557
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:18Z
INSDC last update	2023-01-03T00:32:18Z
INSDC status	public
Submitter Id	SRR5839047_bin.40_CONCOCT_v1.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspadesv3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	98.68
completeness software	CheckM
contamination score	0.66
geographic location (latitude)	8.4692
geographic location (longitude)	-83.2078
metagenomic source	marine metagenome
sample derived from	SAMN07363390
scientific_name	Candidatus Thioglobus perditus
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5839047 of study SRP112803.