Metagenome-assembled genome: SRR6193124_bin.61_CON... - BioSample

Metagenome-assembled genome: SRR6193124_bin.61_CONCOCT_v1.1_MAG

Organism: uncultured Fodinibius sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Balneolota; Balneolia; Balneolales; Balneolaceae; Fodinibius; environmental samples

Attributes

collection date	2011-12-09
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Marine sediment microbial community from Fremont, CA, USA - Pond A23 Sediment 2 metagenome
sample name	SRR6193124_bin.61_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075579
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:23Z
INSDC last update	2023-01-03T00:32:23Z
INSDC status	public
Submitter Id	SRR6193124_bin.61_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	65.55
completeness software	CheckM
contamination score	1.64
geographic location (latitude)	37.474068
geographic location (longitude)	-121.97303
metagenomic source	marine metagenome
sample derived from	SAMN06268884
scientific_name	uncultured Aliifodinibius sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6193124 of study SRP120577.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
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