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Metagenome-assembled genome: DRR014782_bin.10_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075627; SRA: ERS11678856
Organism
uncultured Porphyromonadaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; environmental samples
Attributes
collection datenot provided
broad-scale environmental contextMixed
local-scale environmental contextMixed
environmental mediumMixed
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project namePolyamines (PAs), such as putrescine, Spermidine, and spermine are related with cvarious bioactivity include strong anti-inflammatory function. Increasing PA concentration in intestine using probiotics; Bifidobacterium animalis subsp. lactis LKM512 caused inhibition of senescence and enhancing longevity of mice. We found that Arg intake also showed increase PAs concentration especially Putrescine. Mouse intakes Arg and LKM 512 resulted inhibited systemic inflammation, prolonged longevity, promoted spatial learning and memory. Metagenome analysis of intestinal mictobiota in those mice showed that detection of PA synthesis-related gene were different significantly between control and test mice.
sample nameDRR014782_bin.10_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14075627
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:47Z
INSDC last update2023-01-03T00:32:47Z
INSDC statuspublic
Submitter IdDRR014782_bin.10_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.17
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcemetagenome
sample derived fromSAMD00008975
scientific_nameuncultured Porphyromonadaceae bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run DRR014782 of study DRP001305.

BioProject
PRJEB50943 Large-scale analysis of novel cellular microbes
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075627
ID:
32557542

BioProject Nucleotide

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