Metagenome-assembled genome: SRR2134645_bin.114_CO... - BioSample

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Result Filters

Organism: uncultured Bacteroidales bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; environmental samples

Attributes

collection date	2012-11-29
broad-scale environmental context	Mixed
local-scale environmental context	Mixed
environmental medium	Mixed
geographic location	Malaysia
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	To evaluate the effects of feeding prebiotic, probiotic and synbiotic on the functional potential of caecal microbiome
sample name	SRR2134645_bin.114_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075755
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:48Z
INSDC last update	2023-01-03T00:32:48Z
INSDC status	public
Submitter Id	SRR2134645_bin.114_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	94.05
completeness software	CheckM
contamination score	0.56
geographic location (latitude)	2.999988
geographic location (longitude)	101.72307
metagenomic source	metagenome
sample derived from	SAMN03938736
scientific_name	uncultured Bacteroidales bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2134645 of study SRP061731.

BioProject: PRJEB50943 Large-scale analysis of novel cellular microbes
Retrieve all samples from this project

Metagenome-assembled genome: SRR2134645_bin.114_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2134645_bin.114_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Ruminococcus sp. isolate DRR014786_bin.19_CONCOCT_v1.1_M...
MAG TPA_asm: uncultured Ruminococcus sp. isolate DRR014786_bin.19_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424900672|tpe|CALGUR000000000.1 UR010000000

Nucleotide
Metagenome-assembled genome: SRR6425771_bin.122_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6425771_bin.122_CONCOCT_v1.1_MAG

biosample
Caenorhabditis elegans Cadherin EGF LAG seven-pass G-type receptor fmi-1 (fmi-1)...
Caenorhabditis elegans Cadherin EGF LAG seven-pass G-type receptor fmi-1 (fmi-1), partial mRNA
gi|1831517966|ref|NM_001313143.3|

Nucleotide
Microbe sample from Helicobacter sp. MIT 21-1697
Microbe sample from Helicobacter sp. MIT 21-1697

biosample

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