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Metagenome-assembled genome: SRR2240256_bin.39_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075805; SRA: ERS11679033
Organism
uncultured Corynebacterium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; environmental samples
Attributes
collection datenot provided
broad-scale environmental contextMixed
local-scale environmental contextMixed
environmental mediumMixed
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameThe samples within this Bioproject represent the third phase (Phase III) of metagenomic sequencing (whole genome shotgun (WGS) sequencing) of microbial communities from specimens collected as a part of the NIH-supported Human Microbiome Project (HMP Consortium A framework for human microbiome research. Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209). The sample collection represents a unique reference resource of microbiome samples from healthy adults largely residing in the USA at the time of sample collection. In the HMP Phase III component the goal has been to supplement previous WGS sequencing by generating additional sequence from as many of the specimens in the HMP collection as possible that had not been sequenced in the previous HMP Phase I and Phase II sequencing. In Phase III, a focus was placed on six of the 18 body sites: Stool (gut), Buccal mucosa (oral), Supragingival plaque (oral), Tongue dorsum (oral), Anterior nares (nasal), Posterior fornix (vaginal) and the goal was to further capture as many of the longitudinal samples (second and third visits by the same individual) as possible. From genomic DNA extracted from the collected specimens, WGS sequence was produced from libraries constructed from using a NexteraXT library construction protocol. All libraries were sequenced using a 100bp paired end approach using the Illumina HiSeq 2000 platform.
sample nameSRR2240256_bin.39_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14075805
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:48Z
INSDC last update2023-01-03T00:32:48Z
INSDC statuspublic
Submitter IdSRR2240256_bin.39_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score98.83
completeness softwareCheckM
contamination score0.99
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcemetagenome
sample derived fromSAMN03351465
scientific_nameuncultured Corynebacterium sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2240256 of study SRP056641.

BioProject
PRJEB50943 Large-scale analysis of novel cellular microbes
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075805
ID:
32557719

BioProject Nucleotide

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