Metagenome-assembled genome: SRR6425758_bin.94_CON... - BioSample

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Result Filters

Organism: uncultured Treponema sp.
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; environmental samples

Attributes

collection date	2013-08-01
broad-scale environmental context	Mixed
local-scale environmental context	Mixed
environmental medium	Mixed
geographic location	China
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Microbiota as a functional assemblage of microbes plays an important role in environment and in lives of multicellular organisms. Animal gut microbiota is strongly influenced by dietary factors while soil microbial flora can be shaped by various physical, chemical, and biological conditions.
sample name	SRR6425758_bin.94_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14075865
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:51Z
INSDC last update	2023-01-03T00:32:51Z
INSDC status	public
Submitter Id	SRR6425758_bin.94_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes v3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	98.6
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	42.25
geographic location (longitude)	113.83
metagenomic source	metagenome
sample derived from	SAMN08242303
scientific_name	uncultured Treponema sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6425758 of study SRP127637.

BioProject: PRJEB50943 Large-scale analysis of novel cellular microbes
Retrieve all samples from this project

Metagenome-assembled genome: SRR6425758_bin.94_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6425758_bin.94_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Clostridia bacterium isolate SRR6425810_bin.150_CONCOCT_...
MAG TPA_asm: uncultured Clostridia bacterium isolate SRR6425810_bin.150_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423494755|tpe|CALBJG000000000.1 JG010000000

Nucleotide
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR6425755_bin.60_...
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR6425755_bin.60_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423843701|tpe|CALDOX000000000.1 OX010000000

Nucleotide
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR2244943_bin.76_CONC...
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR2244943_bin.76_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423463505|tpe|CALBNE000000000.1 NE010000000

Nucleotide
Metagenome-assembled genome: SRR1952507_bin.65_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1952507_bin.65_CONCOCT_v1.1_MAG

biosample

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