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Metagenome-assembled genome: SRR6490003_bin.25_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14076141; SRA: ERS11679369
Organism
uncultured Francisellaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; environmental samples
Attributes
collection date2014-05-01
broad-scale environmental contextMixed
local-scale environmental contextMixed
environmental mediumMixed
geographic locationAtlantic Ocean
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameTrichodesmium is a globally important marine nitrogen fixing cyanobacterium that forms colonies and ubiquitously co-occurs with a diverse consortium of epibiotic microorganisms. The role of the co-occurring microbes, or epibionts, in influence Trichodesmium success in the environment has yet to be determined. This study sought to explore the metabolic potential in the Trichodesmium microbiome by sequencing metagenomes from Trichodesmium colonies collected along a transect in the western North Atlantic ocean.
sample nameSRR6490003_bin.25_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14076141
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:52Z
INSDC last update2023-01-03T00:32:52Z
INSDC statuspublic
Submitter IdSRR6490003_bin.25_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score93.48
completeness softwareCheckM
contamination score3.67
geographic location (latitude)21.23
geographic location (longitude)-64.89
metagenomic sourcemetagenome
sample derived fromSAMN05433519
scientific_nameuncultured Francisellaceae bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6490003 of study SRP130765.

BioProject
PRJEB50943 Large-scale analysis of novel cellular microbes
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14076141
ID:
32558055

BioProject Nucleotide

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