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Metagenome-assembled genome: SRR789046_bin.6_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14076156; SRA: ERS11679384
Organism
Barnesiella viscericola
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella
Attributes
collection date2010-09-07
broad-scale environmental contextMixed
local-scale environmental contextMixed
environmental mediumMixed
geographic locationUnited Kingdom
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameChickens are major source of food and protein worldwide. Feed conversion and the health of chickens relies on the largely unexplored complex microbial community that inhabits the chicken gut, particularly the ceca. Therefore a studly goal was to use in-depth metagenomics of the ceca to examine the microbial community from the ceca of a Broiler Chicken.
sample nameSRR789046_bin.6_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14076156
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:53Z
INSDC last update2023-01-03T00:32:53Z
INSDC statuspublic
Submitter IdSRR789046_bin.6_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.14.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score99.25
completeness softwareCheckM
contamination score0.0
geographic location (latitude)50.9047
geographic location (longitude)-3.5233
metagenomic sourcemetagenome
sample derived fromSAMN01983846
scientific_nameBarnesiella viscericola
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR789046 of study SRP019776.

BioProject
PRJEB50943 Large-scale analysis of novel cellular microbes
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14076156
ID:
32558070

BioProject Nucleotide

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