Metagenome-assembled genome: DRR014784_bin.144_CON... - BioSample

Metagenome-assembled genome: DRR014784_bin.144_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14080427; SRA: ERS11683683

Organism: uncultured Porphyromonadaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Mammals
environmental medium	Digestive system
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	Polyamines (PAs), such as putrescine, Spermidine, and spermine are related with cvarious bioactivity include strong anti-inflammatory function. Increasing PA concentration in intestine using probiotics; Bifidobacterium animalis subsp. lactis LKM512 caused inhibition of senescence and enhancing longevity of mice. We found that Arg intake also showed increase PAs concentration especially Putrescine. Mouse intakes Arg and LKM 512 resulted inhibited systemic inflammation, prolonged longevity, promoted spatial learning and memory. Metagenome analysis of intestinal mictobiota in those mice showed that detection of PA synthesis-related gene were different significantly between control and test mice.
sample name	DRR014784_bin.144_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14080427
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:59Z
INSDC last update	2023-01-03T00:32:59Z
INSDC status	public
Submitter Id	DRR014784_bin.144_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.23
completeness software	CheckM
contamination score	0.38
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	gut metagenome
sample derived from	SAMD00008873
scientific_name	uncultured Porphyromonadaceae bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run DRR014784 of study DRP001307.

BioProject: PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
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Submission: EBI; 2023-01-04

Accession:: SAMEA14080427
ID:: 32558115

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Metagenome-assembled genome: DRR014784_bin.144_CONCOCT_v1.1_MAG

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