Metagenome-assembled genome: SRR1747026_bin.56_CON... - BioSample

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Result Filters

Organism: uncultured Bacteroidales bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; environmental samples

Attributes

collection date	2012-08-04
broad-scale environmental context	Host-associated
local-scale environmental context	Mammals
environmental medium	Digestive system
geographic location	Kenya
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	Raw metagenomic sequencing reads collected from samples from 48 adult baboons in two social groups during July - August 2012.
sample name	SRR1747026_bin.56_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14080802
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:54Z
INSDC last update	2023-01-03T00:32:54Z
INSDC status	public
Submitter Id	SRR1747026_bin.56_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.65
completeness software	CheckM
contamination score	4.32
geographic location (latitude)	-2.717
geographic location (longitude)	37.1
metagenomic source	gut metagenome
sample derived from	SAMN03275579
scientific_name	uncultured Bacteroidales bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1747026 of study SRP051834.

BioProject: PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR1747026_bin.56_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1747026_bin.56_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Prevotellaceae bacterium isolate ERR318704_bin.86_CONCOC...
MAG TPA_asm: uncultured Prevotellaceae bacterium isolate ERR318704_bin.86_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424413693|tpe|CALCAW000000000.1 AW010000000

Nucleotide
MAG TPA_asm: uncultured Clostridia bacterium isolate DRR014734_bin.50_CONCOCT_v1...
MAG TPA_asm: uncultured Clostridia bacterium isolate DRR014734_bin.50_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423485613|tpe|CALAAH000000000.1 AH010000000

Nucleotide
Rattus norvegicus Klotho (Kl), mRNA
Rattus norvegicus Klotho (Kl), mRNA
gi|1937921936|ref|NM_031336.2|

Nucleotide
PREDICTED: Homo sapiens terminal uridylyl transferase 4 (TUT4), transcript varia...
PREDICTED: Homo sapiens terminal uridylyl transferase 4 (TUT4), transcript variant X31, mRNA
gi|2462506972|ref|XM_054335540.1|

Nucleotide

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