Metagenome-assembled genome: SRR1747061_bin.119_CO... - BioSample

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Result Filters

Organism: uncultured Treponema sp.
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; environmental samples

Attributes

collection date	2012-08-08
broad-scale environmental context	Host-associated
local-scale environmental context	Mammals
environmental medium	Digestive system
geographic location	Kenya
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	Raw metagenomic sequencing reads collected from samples from 48 adult baboons in two social groups during July - August 2012.
sample name	SRR1747061_bin.119_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14080908
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:01Z
INSDC last update	2023-01-03T00:33:01Z
INSDC status	public
Submitter Id	SRR1747061_bin.119_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	98.25
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	-2.717
geographic location (longitude)	37.1
metagenomic source	gut metagenome
sample derived from	SAMN03275614
scientific_name	uncultured Treponema sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1747061 of study SRP051834.

BioProject: PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR1747061_bin.119_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1747061_bin.119_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR318692_bin.93_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR318692_bin.93_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR982835_bin.59_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR982835_bin.59_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR1278103_bin.114_CON...
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR1278103_bin.114_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423171849|tpe|CALCRT000000000.1 RT010000000

Nucleotide
Metagenome-assembled genome: SRR1747059_bin.60_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1747059_bin.60_CONCOCT_v1.1_MAG

biosample

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