Metagenome-assembled genome: SRR4116675_bin.146_CO... - BioSample

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Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Mammals
environmental medium	Digestive system
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	Investigating the association among IL-17, a high-fat diet(HFD), and the gut microbiota
sample name	SRR4116675_bin.146_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14081030
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:04Z
INSDC last update	2023-01-03T00:33:04Z
INSDC status	public
Submitter Id	SRR4116675_bin.146_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	85.87
completeness software	CheckM
contamination score	0.67
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	gut metagenome
sample derived from	SAMN05717377
scientific_name	uncultured Clostridia bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4116675 of study SRP084038.

BioProject: PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR4116675_bin.146_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR4116675_bin.146_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR1747026_bin.2_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1747026_bin.2_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Bacillales bacterium isolate SRR1747062_bin.13_CONCOCT_v...
MAG TPA_asm: uncultured Bacillales bacterium isolate SRR1747062_bin.13_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423332782|tpe|CALBYQ000000000.1 YQ010000000

Nucleotide
MAG TPA_asm: uncultured Subdoligranulum sp. isolate ERR318707_bin.71_CONCOCT_v1....
MAG TPA_asm: uncultured Subdoligranulum sp. isolate ERR318707_bin.71_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425322623|tpe|CALADU000000000.1 DU010000000

Nucleotide
MAG TPA_asm: uncultured Parabacteroides sp. isolate ERR1135178_bin.104_CONCOCT_v...
MAG TPA_asm: uncultured Parabacteroides sp. isolate ERR1135178_bin.104_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425147006|tpe|CALADB000000000.1 DB010000000

Nucleotide

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