Metagenome-assembled genome: SRR5574474_bin.80_CON... - BioSample

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Result Filters

Organism: uncultured Porphyromonadaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; environmental samples

Attributes

collection date	2016-01-25
broad-scale environmental context	Host-associated
local-scale environmental context	Mammals
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	This study presented the bacteria of feces sample from the C57BL/6 mice.
sample name	SRR5574474_bin.80_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14081062
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:57Z
INSDC last update	2023-01-03T00:32:57Z
INSDC status	public
Submitter Id	SRR5574474_bin.80_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.35
completeness software	CheckM
contamination score	0.79
geographic location (latitude)	32.07
geographic location (longitude)	118.78
metagenomic source	gut metagenome
sample derived from	SAMN07135831
scientific_name	uncultured Porphyromonadaceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5574474 of study SRP107170.

BioProject: PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5574474_bin.80_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5574474_bin.80_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Bacteroidales bacterium isolate SRR873609_bin.253_CONCOC...
MAG TPA_asm: uncultured Bacteroidales bacterium isolate SRR873609_bin.253_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426211019|tpe|CALAPD000000000.1 PD010000000

Nucleotide
Metagenome-assembled genome: SRR1747021_bin.129_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1747021_bin.129_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Blautia sp. isolate ERR318694_bin.63_CONCOCT_v1.1_MAG, w...
MAG TPA_asm: uncultured Blautia sp. isolate ERR318694_bin.63_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424583552|tpe|CALCAS000000000.1 AS010000000

Nucleotide
Metagenome-assembled genome: ERR318711_bin.9_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR318711_bin.9_CONCOCT_v1.1_MAG

biosample

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