Metagenome-assembled genome: SRR5574491_bin.107_CO... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

collection date	2016-01-25
broad-scale environmental context	Host-associated
local-scale environmental context	Mammals
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	This study presented the bacteria of feces sample from the C57BL/6 mice.
sample name	SRR5574491_bin.107_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14081082
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:00Z
INSDC last update	2023-01-03T00:33:00Z
INSDC status	public
Submitter Id	SRR5574491_bin.107_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	94.63
completeness software	CheckM
contamination score	4.31
geographic location (latitude)	32.07
geographic location (longitude)	118.78
metagenomic source	gut metagenome
sample derived from	SAMN07135831
scientific_name	uncultured Lachnospiraceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5574491 of study SRP107170.

BioProject: PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5574491_bin.107_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5574491_bin.107_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Prevotella sp. isolate ERR833214_bin.36_CONCOCT_v1.1_MAG...
MAG TPA_asm: uncultured Prevotella sp. isolate ERR833214_bin.36_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425220245|tpe|CALEQR000000000.1 QR010000000

Nucleotide
MAG TPA_asm: uncultured Treponema sp. isolate SRR1747026_bin.2_CONCOCT_v1.1_MAG,...
MAG TPA_asm: uncultured Treponema sp. isolate SRR1747026_bin.2_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424823330|tpe|CALGFR000000000.1 FR010000000

Nucleotide
MAG TPA_asm: uncultured Clostridia bacterium isolate SRR1747061_bin.110_CONCOCT_...
MAG TPA_asm: uncultured Clostridia bacterium isolate SRR1747061_bin.110_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423420610|tpe|CALBQG000000000.1 QG010000000

Nucleotide
MAG TPA_asm: uncultured Desulfovibrio sp. isolate SRR5574520_bin.13_CONCOCT_v1.1...
MAG TPA_asm: uncultured Desulfovibrio sp. isolate SRR5574520_bin.13_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423425671|tpe|CALFJR000000000.1 JR010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample