Metagenome-assembled genome: SRR5574497_bin.50_CON... - BioSample

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Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

collection date	2016-01-25
broad-scale environmental context	Host-associated
local-scale environmental context	Mammals
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	gut metagenome
project name	This study presented the bacteria of feces sample from the C57BL/6 mice.
sample name	SRR5574497_bin.50_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14081093
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:03Z
INSDC last update	2023-01-03T00:33:03Z
INSDC status	public
Submitter Id	SRR5574497_bin.50_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.55
completeness software	CheckM
contamination score	1.92
geographic location (latitude)	32.07
geographic location (longitude)	118.78
metagenomic source	gut metagenome
sample derived from	SAMN07138961
scientific_name	uncultured Lachnospiraceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5574497 of study SRP107170.

BioProject: PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

MAG TPA_asm: uncultured Clostridia bacterium isolate SRR1747038_bin.2_CONCOCT_v1...
MAG TPA_asm: uncultured Clostridia bacterium isolate SRR1747038_bin.2_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424510729|tpe|CALGVH000000000.1 VH010000000

Nucleotide
Metagenome-assembled genome: SRR5574497_bin.50_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5574497_bin.50_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR1278103_bin.189_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1278103_bin.189_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Ruminococcus sp. isolate ERR1278105_bin.198_CONCOCT_v1.1...
MAG TPA_asm: uncultured Ruminococcus sp. isolate ERR1278105_bin.198_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425456311|tpe|CALCRR000000000.1 RR010000000

Nucleotide
MAG TPA_asm: uncultured Bacillales bacterium isolate SRR1747044_bin.63_CONCOCT_v...
MAG TPA_asm: uncultured Bacillales bacterium isolate SRR1747044_bin.63_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423244613|tpe|CALBHT000000000.1 HT010000000

Nucleotide

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