Metagenome-assembled genome: SRR1506988_bin.90_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Pseudobdellovibrionaceae bacterium
cellular organisms; Bacteria; Bdellovibrionota; Bdellovibrionia; Bdellovibrionales; Pseudobdellovibrionaceae; environmental samples

Attributes

collection date	2011-11-25
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	Australia
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Two lab-scale EBPR bioreactors were operated for approximately one year with samples taken at multiple time points to assess the dynamics of the microbial and viral communities.
sample name	SRR1506988_bin.90_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14081732
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:41Z
INSDC last update	2023-01-03T00:32:41Z
INSDC status	public
Submitter Id	SRR1506988_bin.90_CONCOCT_v1.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	94.64
completeness software	CheckM
contamination score	3.65
geographic location (latitude)	-27.485973
geographic location (longitude)	153.1907
metagenomic source	metagenome
sample derived from	SAMN02850039
scientific_name	uncultured Bdellovibrionaceae bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1506988 of study SRP044055.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR1506988_bin.90_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1506988_bin.90_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR6231213_bin.3_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6231213_bin.3_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR3330205_bin.168_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3330205_bin.168_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR3901700_bin.36_...
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR3901700_bin.36_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424018798|tpe|CALFMI000000000.1 MI010000000

Nucleotide
Metagenome-assembled genome: SRR3330210_bin.172_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3330210_bin.172_CONCOCT_v1.1_MAG

biosample

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample