Metagenome-assembled genome: SRR4028130_bin.12_CON... - BioSample

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Result Filters

Organism: uncultured Planctomicrobium sp.
cellular organisms; Bacteria; PVC group; Planctomycetota; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctomicrobium; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Mesophilic microbial community from rice straw/compost enrichment Sample: eDNA_1 metagenome
sample name	SRR4028130_bin.12_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14081990
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:23Z
INSDC last update	2023-01-03T00:32:23Z
INSDC status	public
Submitter Id	SRR4028130_bin.12_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.22
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	38.54027
geographic location (longitude)	-121.75008
metagenomic source	metagenome
sample derived from	SAMN05518145
scientific_name	uncultured Planctomicrobium sp.
sequencing method	Illumina Genome Analyzer II
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4028130 of study SRP081801.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR4028130_bin.12_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR4028130_bin.12_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR6713625_bin.42_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6713625_bin.42_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Candidatus Odyssella sp. isolate SRR1506987_bin.130_CONC...
MAG TPA_asm: uncultured Candidatus Odyssella sp. isolate SRR1506987_bin.130_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425599235|tpe|CALKII000000000.1 II010000000

Nucleotide
MAG TPA_asm: uncultured Pseudomonas sp. isolate SRR6713626_bin.99_CONCOCT_v1.1_M...
MAG TPA_asm: uncultured Pseudomonas sp. isolate SRR6713626_bin.99_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424758719|tpe|CALGAC000000000.1 AC010000000

Nucleotide
Metagenome-assembled genome: SRR1506987_bin.103_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1506987_bin.103_CONCOCT_v1.1_MAG

biosample

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