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Metagenome-assembled genome: SRR5576004_bin.48_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082149; SRA: ERS11685285
Organism
uncultured Chthonomonas sp.
cellular organisms; Bacteria; Terrabacteria group; Armatimonadota; Chthonomonadia; Chthonomonadales; Chthonomonadaceae; Chthonomonas; environmental samples
Attributes
collection date2015-10-15
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameThis project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we’ve shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
sample nameSRR5576004_bin.48_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082149
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:36Z
INSDC last update2023-01-03T00:32:36Z
INSDC statuspublic
Submitter IdSRR5576004_bin.48_CONCOCT_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score92.13
completeness softwareCheckM
contamination score0.93
geographic location (latitude)42.06
geographic location (longitude)-87.68
metagenomic sourcemetagenome
sample derived fromSAMN06957055
scientific_nameuncultured Chthonomonas sp.
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5576004 of study SRP107338.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082149
ID:
32559445

BioProject Nucleotide

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