Metagenome-assembled genome: ERR1600578_bin.62_CON... - BioSample

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Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

collection date	2016-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	T2D patients were randomly divided into two groups receiving WTP diet or usual care. The gut microbiota changed and the host clinical parameters were improved. Several key bacteria were identified.
sample name	ERR1600578_bin.62_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14083680
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:27Z
INSDC last update	2023-01-03T00:33:27Z
INSDC status	public
Submitter Id	ERR1600578_bin.62_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.42
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMEA4385436
scientific_name	uncultured Lachnospiraceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1600578 of study ERP016884.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR1600578_bin.62_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1600578_bin.62_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Prevotella sp. isolate ERR1190933_bin.53_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Prevotella sp. isolate ERR1190933_bin.53_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423637623|tpe|CALILE000000000.1 LE010000000

Nucleotide
Metagenome-assembled genome: ERR414458_bin.94_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR414458_bin.94_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Ruminococcus sp. isolate SRR5106302_bin.17_CONCOCT_v1.1_...
MAG TPA_asm: uncultured Ruminococcus sp. isolate SRR5106302_bin.17_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423657449|tpe|CALJQY000000000.1 QY010000000

Nucleotide
Metagenome-assembled genome: ERR1430522_bin.20_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1430522_bin.20_CONCOCT_v1.1_MAG

biosample

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