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Metagenome-assembled genome: ERR2013636_bin.42_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14083893; SRA: ERS11687027
Organism
uncultured Firmicutes bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; environmental samples
Attributes
collection date2015-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameThe gut microbiome could modulate metabolic health and affect insulin resistance, which may play a role in the observed increase in gestational diabetes mellitus (GDM). The aim of this study was to reveal any relationships between gut microbiome composition and GDM in pregnant women at 24-28 weeks gestation. Fecal samples were collected from 124 pregnant women (43 GDM patients and 81 healthy control subjects) during 24-28 weeks gestation, as part of the Born in Guangzhou Cohort Study, China. The gut microbiota profiles were assessed by metagenomic shotgun sequencing to analyze microbial diversity at all taxonomic levels. Maternal GDM status was assessed by 2-hour 75g OGTT between the 24th and 28th week of gestation.
sample nameERR2013636_bin.42_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14083893
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:41Z
INSDC last update2023-01-03T00:33:41Z
INSDC statuspublic
Submitter IdERR2013636_bin.42_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades_v3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score90.94
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA37118668
scientific_nameuncultured Firmicutes bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2013636 of study ERP020710.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14083893
ID:
32560522

BioProject Nucleotide

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