Metagenome-assembled genome: ERR260195_bin.69_CONC... - BioSample

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Result Filters

Organism: Lactococcus lactis
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Gut metagenome in European women with normal, impaired and diabetic glucose control
sample name	ERR260195_bin.69_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14084047
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:41Z
INSDC last update	2023-01-03T00:33:41Z
INSDC status	public
Submitter Id	ERR260195_bin.69_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.66
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMEA1906477
scientific_name	Lactococcus lactis
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR260195 of study ERP002469.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR260195_bin.69_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR260195_bin.69_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: Candidatus Methanomassiliicoccus intestinalis isolate ERR414292_bin...
MAG TPA_asm: Candidatus Methanomassiliicoccus intestinalis isolate ERR414292_bin.41_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423577238|tpe|CALIFP000000000.1 FP010000000

Nucleotide
Metagenome-assembled genome: SRR12395652_bin.17_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR12395652_bin.17_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: Bifidobacterium breve isolate SRR4305348_bin.15_CONCOCT_v1.1_MAG, w...
MAG TPA_asm: Bifidobacterium breve isolate SRR4305348_bin.15_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424038635|tpe|CALJQT000000000.1 QT010000000

Nucleotide
MAG TPA_asm: uncultured Collinsella sp. isolate ERR1190852_bin.89_CONCOCT_v1.1_M...
MAG TPA_asm: uncultured Collinsella sp. isolate ERR1190852_bin.89_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424121041|tpe|CALBWJ000000000.1 WJ010000000

Nucleotide

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