Metagenome-assembled genome: ERR505083_bin.20_CONC... - BioSample

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Result Filters

Organism: uncultured Firmicutes bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; environmental samples

Attributes

collection date	2012-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Australia
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Two diets, Korean and Western diet. Each 6 individuals, half of which loose high weight and half of which loose little weight. Fecal samples taken before and after diet (3 months).
sample name	ERR505083_bin.20_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14084443
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:41Z
INSDC last update	2023-01-03T00:33:41Z
INSDC status	public
Submitter Id	ERR505083_bin.20_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes genome assembler v3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	95.61
completeness software	CheckM
contamination score	6.16
geographic location (latitude)	33.86
geographic location (longitude)	151.2111
metagenomic source	human gut metagenome
sample derived from	SAMEA2452114
scientific_name	uncultured Firmicutes bacterium
sequencing method	Illumina HiSeq 1000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR505083 of study ERP005558.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR505083_bin.20_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR505083_bin.20_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR589443_bin.42_CONCO...
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR589443_bin.42_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426568755|tpe|CALIHZ000000000.1 HZ010000000

Nucleotide
Metagenome-assembled genome: SRR2992891_bin.60_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2992891_bin.60_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR2912803_bin.17_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2912803_bin.17_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912138_bin.42_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912138_bin.42_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423540511|tpe|CALHHF000000000.1 HF010000000

Nucleotide

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