U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: ERR688525_bin.87_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14085040; SRA: ERS11688172
Organism
uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples
Attributes
collection date2013-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationAustria
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameColorectal cancer, a commonly diagnosed cancer in the elderly, often develops slowly from benign polyps called adenoma. The gut microbiota, with its critical roles in nutrient metabolism and immune modulation, is believed to be directly involved in colorectal carcinogenesis. The identity and functional capacity of the adenoma- or carcinoma-related gut microbe(s), however, have not been surveyed in a comprehensive manner. Here we perform metagenomewide association study (MGWAS) on stools from healthy controls, advanced adenoma and carcinoma patients, revealing gene markers from over 100 bacterial strains enriched in each group.
sample nameERR688525_bin.87_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14085040
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:13Z
INSDC last update2023-01-03T00:33:13Z
INSDC statuspublic
Submitter IdERR688525_bin.87_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score99.14
completeness softwareCheckM
contamination score0.0
geographic location (latitude)47.80151
geographic location (longitude)13.04292
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA3136743
scientific_nameuncultured Clostridium sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR688525 of study ERP008729.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14085040
ID:
32561667

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center