Metagenome-assembled genome: SRR12395647_bin.82_CO... - BioSample

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Result Filters

Organism: Lawsonella clevelandensis
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Lawsonellaceae; Lawsonella

Attributes

collection date	2015-08-20
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Metagenomic sequencing of the gut from kidney stone patients and healthy controls
sample name	SRR12395647_bin.82_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085468
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:24Z
INSDC last update	2023-01-03T00:33:24Z
INSDC status	public
Submitter Id	SRR12395647_bin.82_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	80.96
completeness software	CheckM
contamination score	3.04
geographic location (latitude)	42.98
geographic location (longitude)	-81.24
metagenomic source	human gut metagenome
sample derived from	SAMN15661744
scientific_name	Lawsonella clevelandensis
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12395647 of study SRP276112.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR12395647_bin.82_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR12395647_bin.82_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR1430431_bin.145_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1430431_bin.145_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured bacterium isolate ERR321617_bin.5_CONCOCT_v1.1_MAG, whol...
MAG TPA_asm: uncultured bacterium isolate ERR321617_bin.5_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423680388|tpe|CALAHY000000000.1 HY010000000

Nucleotide
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR414302_bin.55_CONCOCT_v1...
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR414302_bin.55_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423000978|tpe|CALLTB000000000.1 TB010000000

Nucleotide
Metagenome-assembled genome: ERR321651_bin.96_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR321651_bin.96_CONCOCT_v1.1_MAG

biosample

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