Metagenome-assembled genome: SRR2047620_bin.31_CON... - BioSample

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Result Filters

Organism: Enterococcus faecium
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus

Attributes

collection date	2012-03-20
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Comparative analysis of the gut microbiomes of pediatric stem cell transplantation patients who do or do not develop intestinal graft-versus-host-disease (GVHD)
sample name	SRR2047620_bin.31_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085599
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:34Z
INSDC last update	2023-01-03T00:33:34Z
INSDC status	public
Submitter Id	SRR2047620_bin.31_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.5
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	32.8094
geographic location (longitude)	-96.8365
metagenomic source	human gut metagenome
sample derived from	SAMN03653683
scientific_name	Enterococcus faecium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2047620 of study SRP058320.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2047620_bin.31_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2047620_bin.31_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR912098_bin.12_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR912098_bin.12_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR8114094...
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate SRR8114094_bin.69_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2422965968|tpe|CALGWS000000000.1 WS010000000

Nucleotide
MAG TPA_asm: Thomasclavelia spiroformis isolate ERR912015_bin.51_CONCOCT_v1.1_MA...
MAG TPA_asm: Thomasclavelia spiroformis isolate ERR912015_bin.51_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423588118|tpe|CALGQH000000000.1 QH010000000

Nucleotide
MAG TPA_asm: uncultured Prevotella sp. isolate SRR3582169_bin.25_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Prevotella sp. isolate SRR3582169_bin.25_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424707677|tpe|CALHPS000000000.1 PS010000000

Nucleotide

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