Metagenome-assembled genome: SRR2912803_bin.17_CON... - BioSample

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Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Gut microbiome diversity among the Cheyenne &amp; Arapaho of Oklahoma
sample name	SRR2912803_bin.17_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085640
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:08Z
INSDC last update	2023-01-03T00:33:08Z
INSDC status	public
Submitter Id	SRR2912803_bin.17_CONCOCT_v1.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	spades_v3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.17
completeness software	CheckM
contamination score	3.23
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN04209252
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2912803 of study SRP066053.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2912803_bin.17_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2912803_bin.17_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912138_bin.42_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912138_bin.42_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423540511|tpe|CALHHF000000000.1 HF010000000

Nucleotide
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR912199_bin.43_CONCOCT_v1...
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR912199_bin.43_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423642694|tpe|CALECN000000000.1 CN010000000

Nucleotide
Metagenome-assembled genome: ERR912156_bin.120_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR912156_bin.120_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Blautia sp. isolate ERR2198699_bin.75_CONCOCT_v1.1_MAG, ...
MAG TPA_asm: uncultured Blautia sp. isolate ERR2198699_bin.75_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426552598|tpe|CALIWJ000000000.1 WJ010000000

Nucleotide

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