Metagenome-assembled genome: SRR5580397_bin.92_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples

Attributes

collection date	2014-11-04
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	In this study, we performed a randomized, placebo-controlled, double-blind study in newly diagnosed T2D patients on a calorie-restricted diet and showed that metformin, but not calorie restriction, had rapid effects on the composition and function of the gut microbiota.
sample name	SRR5580397_bin.92_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085928
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:13Z
INSDC last update	2023-01-03T00:33:13Z
INSDC status	public
Submitter Id	SRR5580397_bin.92_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	86.98
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	41.99774
geographic location (longitude)	2.820006
metagenomic source	human gut metagenome
sample derived from	SAMN06233224
scientific_name	uncultured Clostridia bacterium
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5580397 of study SRP100518.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5580397_bin.92_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5580397_bin.92_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Treponema sp. isolate ERR2619716_bin.43_CONCOCT_v1.1_MAG...
MAG TPA_asm: uncultured Treponema sp. isolate ERR2619716_bin.43_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424628642|tpe|CALBUL000000000.1 UL010000000

Nucleotide
Metagenome-assembled genome: ERR1190694_bin.4_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1190694_bin.4_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Roseburia sp. isolate ERR2013610_bin.50_CONCOCT_v1.1_MAG...
MAG TPA_asm: uncultured Roseburia sp. isolate ERR2013610_bin.50_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424575055|tpe|CALFFT000000000.1 FT010000000

Nucleotide
Metagenome-assembled genome: SRR7658642_bin.110_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR7658642_bin.110_CONCOCT_v1.1_MAG

biosample

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample