Metagenome-assembled genome: SRR7658651_bin.21_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Senegalimassilia sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Senegalimassilia; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Madagascar
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Stool samples from 112 individuals (two villages) in two rural communities of north-eastern Madagascar. Samples were collected by the Madagascar Health and Environmental Research (MAHERY) initiative between 2013 and 2014, and sequenced with Illumina HiSeq 2500.
sample name	SRR7658651_bin.21_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03T00:33:49Z
ENA-LAST-UPDATE	2023-01-03T00:33:49Z
External Id	SAMEA14086006
INSDC center name	EBI
INSDC first public	2023-01-03T00:33:49Z
INSDC last update	2023-01-03T00:33:49Z
INSDC status	public
Submitter Id	SRR7658651_bin.21_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.6
completeness software	CheckM
contamination score	3.63
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN09781755
scientific_name	uncultured Senegalimassilia sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7658651 of study SRP156699.