Metagenome-assembled genome: SRR7721886_bin.36_CON... - BioSample

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Result Filters

Organism: Bifidobacterium pseudocatenulatum
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Attributes

collection date	2017-03-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Metagenomic data of gut microbiota in T2D diabetes patients before and after three-day metformin treatment
sample name	SRR7721886_bin.36_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14086069
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:32Z
INSDC last update	2023-01-03T00:33:32Z
INSDC status	public
Submitter Id	SRR7721886_bin.36_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	39.916668
geographic location (longitude)	116.38333
metagenomic source	human gut metagenome
sample derived from	SAMN09864038
scientific_name	Bifidobacterium pseudocatenulatum
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7721886 of study SRP158402.