Parcubacteria group bacterium

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Organism: Parcubacteria group bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Patescibacteria group; Parcubacteria group; unclassified Parcubacteria group

Attributes

collection date	2019-10-09
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Switzerland
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35770
sample name	CH-Oct18-95
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14306359
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:15Z
INSDC last update	2022-06-30T00:19:15Z
INSDC status	public
Submitter Id	CH-Oct18-95
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	70.11
completeness software	checkm
contamination score	0
geographic location (latitude)	47.633333
geographic location (longitude)	9.366667
metagenomic source	freshwater metagenome
sample derived from	ERS4409421
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB35640 Freshwater metagenomes from different European and Asian lakes
Retrieve all samples from this project

Parcubacteria group bacterium
Parcubacteria group bacterium

biosample
MAG: Synechococcus sp. UW140 isolate LH-05nov19-87, whole genome shotgun sequenc...
MAG: Synechococcus sp. UW140 isolate LH-05nov19-87, whole genome shotgun sequencing project
gi|2296494820|emb|CAMASU000000000.1 SU010000000

Nucleotide
MAG: Acidimicrobiales bacterium isolate AH-24oct19-23, whole genome shotgun sequ...
MAG: Acidimicrobiales bacterium isolate AH-24oct19-23, whole genome shotgun sequencing project
gi|2778132781|emb|CAXNGQ000000000.1 GQ010000000

Nucleotide
MAG: Akkermansia muciniphila isolate GE-03apr19-198, whole genome shotgun sequen...
MAG: Akkermansia muciniphila isolate GE-03apr19-198, whole genome shotgun sequencing project
gi|2296466433|emb|CAMARZ000000000.1 RZ010000000

Nucleotide
MAG: Ferrithrix thermotolerans DSM 19514 isolate TrH-03may19-239, whole genome s...
MAG: Ferrithrix thermotolerans DSM 19514 isolate TrH-03may19-239, whole genome shotgun sequencing project
gi|2302578361|emb|CAMDRN000000000.1 RN010000000

Nucleotide

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