ERS11712895

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Akkermansia muciniphila
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia

Attributes

collection date	2018-04-23
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB52406
sample name	HRS-HS9-bin-121
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-13
ENA-LAST-UPDATE	2023-04-13
External Id	SAMEA14435041
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2023-04-13T16:27:03Z
INSDC last update	2023-04-13T16:27:03Z
INSDC status	public
Submitter Id	HRS-HS9-bin-121
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 49,69,89,109,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	98.6
completeness software	checkm
contamination score	2.04
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
metagenomic source	freshwater metagenome
sample derived from	ERS11712895
scientific_name	Akkermansia muciniphila
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB52406 High Resolution Sampling of Rimov reservoir
Retrieve all samples from this project

ERS11712895
ERS11712895

biosample
ERS11712894
ERS11712894

biosample
MAG: Crenothrix polyspora isolate HRSG-E1-bin-49, whole genome shotgun sequencin...
MAG: Crenothrix polyspora isolate HRSG-E1-bin-49, whole genome shotgun sequencing project
gi|2496055480|emb|CALQJG000000000.2 JG020000000

Nucleotide
MAG: Candidatus Planktophila lacus isolate HRS-ES2-bin-182, whole genome shotgun...
MAG: Candidatus Planktophila lacus isolate HRS-ES2-bin-182, whole genome shotgun sequencing project
gi|2491824633|emb|CALPVX000000000.2 VX020000000

Nucleotide
MAG: Nitrosovibrio sp. Nv4 isolate HRS-ES2-bin-178, whole genome shotgun sequenc...
MAG: Nitrosovibrio sp. Nv4 isolate HRS-ES2-bin-178, whole genome shotgun sequencing project
gi|2491370344|emb|CALPVV000000000.2 VV020000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample