ERS11624158

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Result Filters

Organism: Pseudomonas synxantha
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group

Attributes

collection date	2020-05-17
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB49198
sample name	JJ-MA1B5-281-3-mx-bin650
ENA first public	2024-04-18
ENA-CHECKLIST	ERC000047
External Id	SAMEA14447289
INSDC center name	Biology Centre CAS
INSDC last update	2022-05-24T13:45:04Z
INSDC status	public
Submitter Id	JJ-MA1B5-281-3-mx-bin650
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	99.36
completeness software	checkm
contamination score	0.32
geographic location (latitude)	50.58204579
geographic location (longitude)	14.65010428
metagenomic source	freshwater metagenome
sample derived from	ERS11624158
scientific_name	Pseudomonas synxantha
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: JJ-MA1B5-281-3-mx-bin650 - Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas

BioProject: PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

ERS11624158
ERS11624158

biosample
ERS11624166
ERS11624166

biosample
MAG: Bradyrhizobium ivorense isolate JJ-MIC7-10-1-m1-bin347, whole genome shotgu...
MAG: Bradyrhizobium ivorense isolate JJ-MIC7-10-1-m1-bin347, whole genome shotgun sequencing project
gi|2719296004|emb|CALRYM000000000.1 YM010000000

Nucleotide
MAG: Rhizobium sp. Q54 isolate JJ-MIS3-109-2-m2-bin119, whole genome shotgun seq...
MAG: Rhizobium sp. Q54 isolate JJ-MIS3-109-2-m2-bin119, whole genome shotgun sequencing project
gi|2719282336|emb|CALSBD000000000.1 BD010000000

Nucleotide
MAG: Ferrovibrio terrae isolate JJ-MA1B5-281-4-m1-bin327, whole genome shotgun s...
MAG: Ferrovibrio terrae isolate JJ-MA1B5-281-4-m1-bin327, whole genome shotgun sequencing project
gi|2719307581|emb|CALRUC000000000.1 UC010000000

Nucleotide

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