ERS11624159

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Result Filters

Organism: Synechococcus sp. UW140
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus

Attributes

collection date	2020-05-17
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB49198
sample name	JJ-MAA6-279-1-mx-bin652
ENA first public	2024-04-18
ENA-CHECKLIST	ERC000047
External Id	SAMEA14447295
INSDC center name	Biology Centre CAS
INSDC last update	2022-05-24T13:45:04Z
INSDC status	public
Submitter Id	JJ-MAA6-279-1-mx-bin652
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	99.73
completeness software	checkm
contamination score	0.54
geographic location (latitude)	50.58204579
geographic location (longitude)	14.65010428
metagenomic source	freshwater metagenome
sample derived from	ERS11624159
scientific_name	Synechococcus sp. UW140
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: JJ-MAA6-279-1-mx-bin652 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus

BioProject: PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

ERS11624159
ERS11624159

biosample
MAG: Synechococcus sp. UW140 isolate JJ-MO2C4-301-1-mx-bin691, whole genome shot...
MAG: Synechococcus sp. UW140 isolate JJ-MO2C4-301-1-mx-bin691, whole genome shotgun sequencing project
gi|2719286119|emb|CALSAP000000000.1 AP010000000

Nucleotide
MAG: Chitinophaga pinensis isolate JJ-MIR1-432-2-mx-bin679, whole genome shotgun...
MAG: Chitinophaga pinensis isolate JJ-MIR1-432-2-mx-bin679, whole genome shotgun sequencing project
gi|2719324964|emb|CALSBI000000000.1 BI010000000

Nucleotide
MAG: Sandarakinorhabdus limnophila DSM 17366 isolate JJ-MEM5D2-223-10-m1-bin340,...
MAG: Sandarakinorhabdus limnophila DSM 17366 isolate JJ-MEM5D2-223-10-m1-bin340, whole genome shotgun sequencing project
gi|2719259161|emb|CALRVL000000000.1 VL010000000

Nucleotide
ERS11624160
ERS11624160

biosample

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