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ERS11624166

Identifiers
BioSample: SAMEA14447338; SRA: ERS12066164
Organism
Polaromonas sp. YR568
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas; unclassified Polaromonas
Attributes
collection date2019-04-09
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-MEM5D2-223-4-m1-bin343
ENA first public2024-04-18
ENA-CHECKLISTERC000047
External IdSAMEA14447338
INSDC center nameBiology Centre CAS
INSDC last update2022-05-24T13:45:05Z
INSDC statuspublic
Submitter IdJJ-MEM5D2-223-4-m1-bin343
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score97.95
completeness softwarecheckm
contamination score0.19
geographic location (latitude)50.17907278
geographic location (longitude)12.586791
metagenomic sourcefreshwater metagenome
sample derived fromERS11624166
scientific_namePolaromonas sp. YR568
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-MEM5D2-223-4-m1-bin343 - Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas

BioProject
PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

Submission
EBI; 2024-04-20
Accession:
SAMEA14447338
ID:
41025698

BioProject Nucleotide

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  • ERS11624166
    ERS11624166
    biosample
  • RecName: Full=Pregnancy-specific beta-1-glycoprotein 6; Short=PS-beta-G-6; Short...
    RecName: Full=Pregnancy-specific beta-1-glycoprotein 6; Short=PS-beta-G-6; Short=PSBG-6; Short=Pregnancy-specific glycoprotein 6; AltName: Full=Pregnancy-specific beta-1-glycoprotein 10; Short=PS-beta-G-10; Short=PSBG-10; Short=Pregnancy-specific glycoprotein 10; AltName: Full=Pregnancy-specific beta-1-glycoprotein 12; Short=PS-beta-G-12; Short=PSBG-12; Short=Pregnancy-specific glycoprotein 12; Flags: Precursor
    gi|1709853|sp|Q00889.1|PSG6_HUMAN
    Protein

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