U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERS11624168

Identifiers
BioSample: SAMEA14447345; SRA: ERS12066171
Organism
Bradyrhizobium ivorense
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Bradyrhizobium
Attributes
collection date2019-04-16
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-MIC7-10-1-m1-bin347
ENA first public2024-04-18
ENA-CHECKLISTERC000047
External IdSAMEA14447345
INSDC center nameBiology Centre CAS
INSDC last update2022-05-24T13:45:05Z
INSDC statuspublic
Submitter IdJJ-MIC7-10-1-m1-bin347
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score67.77
completeness softwarecheckm
contamination score4.98
geographic location (latitude)50.65531976
geographic location (longitude)13.95031488
metagenomic sourcefreshwater metagenome
sample derived fromERS11624168
scientific_nameBradyrhizobium ivorense
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-MIC7-10-1-m1-bin347 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae

BioProject
PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

Submission
EBI; 2024-04-20
Accession:
SAMEA14447345
ID:
41025705

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center