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ERS11624174

Identifiers
BioSample: SAMEA14447381; SRA: ERS12066207
Organism
Cyanobium sp. NIES-981
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Prochlorococcaceae; Cyanobium; unclassified Cyanobium
Attributes
collection date2019-05-16
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-MO2A5B2-362-1-mx-bin685
ENA first public2024-04-18
ENA-CHECKLISTERC000047
External IdSAMEA14447381
INSDC center nameBiology Centre CAS
INSDC last update2022-05-24T13:45:05Z
INSDC statuspublic
Submitter IdJJ-MO2A5B2-362-1-mx-bin685
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score100
completeness softwarecheckm
contamination score0.27
geographic location (latitude)50.53055724
geographic location (longitude)13.63811005
metagenomic sourcefreshwater metagenome
sample derived fromERS11624174
scientific_nameCyanobium sp. NIES-981
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-MO2A5B2-362-1-mx-bin685 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Cyanobium

BioProject
PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

Submission
EBI; 2024-04-20
Accession:
SAMEA14447381
ID:
41025740

BioProject Nucleotide

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  • ERS11624174
    ERS11624174
    biosample
  • ERS11624166
    ERS11624166
    biosample
  • RecName: Full=Pregnancy-specific beta-1-glycoprotein 6; Short=PS-beta-G-6; Short...
    RecName: Full=Pregnancy-specific beta-1-glycoprotein 6; Short=PS-beta-G-6; Short=PSBG-6; Short=Pregnancy-specific glycoprotein 6; AltName: Full=Pregnancy-specific beta-1-glycoprotein 10; Short=PS-beta-G-10; Short=PSBG-10; Short=Pregnancy-specific glycoprotein 10; AltName: Full=Pregnancy-specific beta-1-glycoprotein 12; Short=PS-beta-G-12; Short=PSBG-12; Short=Pregnancy-specific glycoprotein 12; Flags: Precursor
    gi|1709853|sp|Q00889.1|PSG6_HUMAN
    Protein

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