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ERS11624180

Identifiers
BioSample: SAMEA14447401; SRA: ERS12066227
Organism
Synechococcus sp. UW140
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus
Attributes
collection date2020-06-23
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-MO7B3-363-1-mx-bin700
ENA first public2024-04-18
ENA-CHECKLISTERC000047
External IdSAMEA14447401
INSDC center nameBiology Centre CAS
INSDC last update2022-05-24T13:45:06Z
INSDC statuspublic
Submitter IdJJ-MO7B3-363-1-mx-bin700
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score92.89
completeness softwarecheckm
contamination score2.22
geographic location (latitude)50.53055724
geographic location (longitude)13.63811005
metagenomic sourcefreshwater metagenome
sample derived fromERS11624180
scientific_nameSynechococcus sp. UW140
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-MO7B3-363-1-mx-bin700 - Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae

BioProject
PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

Submission
EBI; 2024-04-20
Accession:
SAMEA14447401
ID:
41025760

BioProject Nucleotide

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