U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Human gut MAG #23 derived from sample SRS058070

Identifiers
BioSample: SAMEA5278459; SRA: ERS3085732
Organism
Peptococcaceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Peptococcaceae; unclassified Peptococcaceae
Attributes
collection date2018-01-01
broad-scale environmental contexthuman gut
local-scale environmental contexthuman-associated habitat
environmental mediumfaeces
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcehuman stool
project nameGlobal Human Gut MAGs
sample nameHGM14209
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2019-01-29T17:02:53Z
ENA-LAST-UPDATE2019-01-28T22:39:29Z
External IdSAMEA5278459
INSDC center nameDOE JGI
INSDC first public2019-01-29T17:02:53Z
INSDC last update2019-01-28T22:39:29Z
INSDC statuspublic
Submitter IdHGM14209
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMegaHIT v1.1.1
binning parametersdefault
binning softwareMaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score57.2
completeness softwareCheckM v1.0.7
contamination score3.48
geographic location (latitude)37.09024
geographic location (longitude)-95.712891
metagenomic source408170
sample derived fromSRS883293
scientific_namePeptococcaceae bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
BioProject
PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Submission
EBI; 2019-02-01
Accession:
SAMEA5278459
ID:
10859009

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center