Human gut MAG #52 derived from sample SRS294957

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Result Filters

Organism: Lachnospiraceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; unclassified Lachnospiraceae

Attributes

collection date	2018-01-01
broad-scale environmental context	human gut
local-scale environmental context	human-associated habitat
environmental medium	faeces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human stool
project name	Global Human Gut MAGs
sample name	HGM12523
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2019-01-29T17:02:53Z
ENA-LAST-UPDATE	2019-01-28T22:39:29Z
External Id	SAMEA5278461
INSDC center name	DOE JGI
INSDC first public	2019-01-29T17:02:53Z
INSDC last update	2019-01-28T22:39:29Z
INSDC status	public
Submitter Id	HGM12523
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MegaHIT v1.1.1
binning parameters	default
binning software	MaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score	50.0
completeness software	CheckM v1.0.7
contamination score	1.72
geographic location (latitude)	35.86166
geographic location (longitude)	104.195397
metagenomic source	408170
sample derived from	SRS883293
scientific_name	Lachnospiraceae bacterium
sequencing method	Illumina Genome Analyzer II
taxonomic identity marker	multi-marker approach

BioProject: PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Human gut MAG #52 derived from sample SRS294957
Human gut MAG #52 derived from sample SRS294957

biosample
MAG TPA_asm: uncultured Bacteroides sp. isolate HGM04669, whole genome shotgun s...
MAG TPA_asm: uncultured Bacteroides sp. isolate HGM04669, whole genome shotgun sequencing project
gi|1861815940|tpe|CAADWL000000000.1 WL010000000

Nucleotide
Human gut MAG #22 derived from sample SRS1596876
Human gut MAG #22 derived from sample SRS1596876

biosample

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