Human gut MAG #2 derived from sample SRS1719380

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Result Filters

Organism: uncultured Bifidobacterium sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples

Attributes

collection date	2018-01-01
broad-scale environmental context	human gut
local-scale environmental context	human-associated habitat
environmental medium	faeces
geographic location	Finland
investigation type	metagenome-assembled genome
isolation source	human stool
project name	Global Human Gut MAGs
sample name	HGM01750
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2019-01-29T17:02:53Z
ENA-LAST-UPDATE	2019-01-28T22:39:32Z
External Id	SAMEA5278606
INSDC center name	DOE JGI
INSDC first public	2019-01-29T17:02:53Z
INSDC last update	2019-01-28T22:39:32Z
INSDC status	public
Submitter Id	HGM01750
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MegaHIT v1.1.1
binning parameters	default
binning software	MaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score	53.0
completeness software	CheckM v1.0.7
contamination score	8.85
geographic location (latitude)	61.92411
geographic location (longitude)	25.748151
metagenomic source	408170
sample derived from	SRS883293
scientific_name	uncultured Bifidobacterium sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach