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Human gut MAG #28 derived from sample SRS294961

Identifiers
BioSample: SAMEA5279477; SRA: ERS3086749
Organism
Lactobacillaceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; unclassified Lactobacillaceae
Attributes
collection date2018-01-01
broad-scale environmental contexthuman gut
local-scale environmental contexthuman-associated habitat
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman stool
project nameGlobal Human Gut MAGs
sample nameHGM10122
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2019-01-29T17:02:53Z
ENA-LAST-UPDATE2019-01-28T22:49:21Z
External IdSAMEA5279477
INSDC center nameDOE JGI
INSDC first public2019-01-29T17:02:53Z
INSDC last update2019-01-28T22:49:21Z
INSDC statuspublic
Submitter IdHGM10122
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMegaHIT v1.1.1
binning parametersdefault
binning softwareMaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score96.9
completeness softwareCheckM v1.0.7
contamination score8.51
geographic location (latitude)35.86166
geographic location (longitude)104.195397
metagenomic source408170
sample derived fromSRS883293
scientific_nameLactobacillaceae bacterium
sequencing methodIllumina Genome Analyzer II
taxonomic identity markermulti-marker approach
BioProject
PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Submission
EBI; 2019-02-01
Accession:
SAMEA5279477
ID:
10860029

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