Human gut MAG #2 derived from sample SRS820618

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Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	2018-01-01
broad-scale environmental context	human gut
local-scale environmental context	human-associated habitat
environmental medium	faeces
geographic location	Peru
investigation type	metagenome-assembled genome
isolation source	human stool
project name	Global Human Gut MAGs
sample name	HGM04175
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2019-01-29T17:02:53Z
ENA-LAST-UPDATE	2019-01-28T22:49:21Z
External Id	SAMEA5279483
INSDC center name	DOE JGI
INSDC first public	2019-01-29T17:02:53Z
INSDC last update	2019-01-28T22:49:21Z
INSDC status	public
Submitter Id	HGM04175
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MegaHIT v1.1.1
binning parameters	default
binning software	MaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score	70.1
completeness software	CheckM v1.0.7
contamination score	2.9
geographic location (latitude)	-9.189967
geographic location (longitude)	-75.015152
metagenomic source	408170
sample derived from	SRS883293
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

BioProject: PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Human gut MAG #2 derived from sample SRS820618
Human gut MAG #2 derived from sample SRS820618

biosample
Human gut MAG #64 derived from sample SRS015782
Human gut MAG #64 derived from sample SRS015782

biosample
MAG TPA_asm: Mycoplasmatales bacterium isolate HGM10735, whole genome shotgun se...
MAG TPA_asm: Mycoplasmatales bacterium isolate HGM10735, whole genome shotgun sequencing project
gi|1862266692|tpe|CAAGQD000000000.1 QD010000000

Nucleotide

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