Human gut MAG #20 derived from sample ERS396443

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	2018-01-01
broad-scale environmental context	human gut
local-scale environmental context	human-associated habitat
environmental medium	faeces
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	human stool
project name	Global Human Gut MAGs
sample name	HGM04185
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2019-01-29T17:02:52Z
ENA-LAST-UPDATE	2019-01-28T22:49:24Z
External Id	SAMEA5279572
INSDC center name	DOE JGI
INSDC first public	2019-01-29T17:02:52Z
INSDC last update	2019-01-28T22:49:24Z
INSDC status	public
Submitter Id	HGM04185
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MegaHIT v1.1.1
binning parameters	default
binning software	MaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score	54.5
completeness software	CheckM v1.0.7
contamination score	9.25
geographic location (latitude)	40.463667
geographic location (longitude)	-3.74922
metagenomic source	408170
sample derived from	SRS883293
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach