Human gut MAG #15 derived from sample SRS475566

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Result Filters

Organism: Clostridia bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; unclassified Clostridia

Attributes

collection date	2018-01-01
broad-scale environmental context	human gut
local-scale environmental context	human-associated habitat
environmental medium	faeces
geographic location	Fiji
investigation type	metagenome-assembled genome
isolation source	human stool
project name	Global Human Gut MAGs
sample name	HGM12706
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2019-01-29T17:02:53Z
ENA-LAST-UPDATE	2019-01-28T22:52:46Z
External Id	SAMEA5279809
INSDC center name	DOE JGI
INSDC first public	2019-01-29T17:02:53Z
INSDC last update	2019-01-28T22:52:46Z
INSDC status	public
Submitter Id	HGM12706
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MegaHIT v1.1.1
binning parameters	default
binning software	MaxBin v2.2.4, MetaBAT v2.12.1, CONCOCT v0.4.0, DAS Tool v1.1.0
completeness score	92.4
completeness software	CheckM v1.0.7
contamination score	0.36
geographic location (latitude)	-16.578193
geographic location (longitude)	179.414413
metagenomic source	408170
sample derived from	SRS883293
scientific_name	Clostridia bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB31003 Global Human Gut MAG (HGM) Dataset
Retrieve all samples from this project

Human gut MAG #15 derived from sample SRS475566
Human gut MAG #15 derived from sample SRS475566

biosample
Human gut MAG #51 derived from sample ERS608537
Human gut MAG #51 derived from sample ERS608537

biosample
MAG TPA_asm: uncultured Faecalibacterium sp. isolate HGM13308, whole genome shot...
MAG TPA_asm: uncultured Faecalibacterium sp. isolate HGM13308, whole genome shotgun sequencing project
gi|1862101466|tpe|CAAGDM000000000.1 DM010000000

Nucleotide
Human gut MAG #30 derived from sample ERS537209
Human gut MAG #30 derived from sample ERS537209

biosample

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