Avdat soil crust MAG 62

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Result Filters

Organism: uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples

Attributes

collection date	2017-06
broad-scale environmental context	subtropical desert biome
local-scale environmental context	soil biocrust
environmental medium	soil biocrust
geographic location	Israel
investigation type	metagenome-assembled genome
isolation source	Biological soil crust from Avdat LTER, Negev Desert, Israel
project name	PRJEB36534
sample name	AVDCRST_MAG62
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-05-01T17:08:18Z
ENA-LAST-UPDATE	2020-02-06T14:13:43Z
External Id	SAMEA6526644
INSDC center name	UNIVERSITY OF VIENNA
INSDC first public	2020-05-01T17:08:18Z
INSDC last update	2020-02-06T14:13:43Z
INSDC status	public
Submitter Id	AVDCRST_MAG62
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;kmer set 21,31,41,51,61,71,81,91,101,111,121,127, otherwise default parameters
binning parameters	differential coverage across 5 samples, 4-mer frequencies
binning software	MetaBAT v. 2.12.1, MaxBin v. 2.2.4, Metawatt v. 3.5.3 summarized via DASTool v. 1.1.0 and refined in Anvi’O v. 5.2
completeness score	84.07
completeness software	CheckM v.1.0.7
contamination score	2.48
geographic location (latitude)	30.786
geographic location (longitude)	34.767
metagenomic source	soil crust metagenome
sample derived from	ERS4290239
scientific_name	uncultured Sphingomonas sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	Genome Taxonomy Database classifier (120 protein markers)

Description: This sample represents a MAG from the metagenomic samples ERS4282875,ERS4282876,ERS4282877,ERS4282878,ERS4282879. Binned from assembly ERZ1300029

BioProject: PRJEB36534 Negev crust metagenomes
Retrieve all samples from this project

Avdat soil crust MAG 62
Avdat soil crust MAG 62

biosample
Avdat soil crust MAG 26
Avdat soil crust MAG 26

biosample
ribosomal protein S16 (chloroplast) [Abelmoschus esculentus]
ribosomal protein S16 (chloroplast) [Abelmoschus esculentus]
gi|1215836299|ref|YP_009390287.1|

Protein
hypothetical protein AK88_07042 (apicoplast) [Plasmodium fragile]
hypothetical protein AK88_07042 (apicoplast) [Plasmodium fragile]
gi|772402037|gb|KJP90339.1||gnl|WGS |AK88_07042T0

Protein

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