Chicken_12_mag_162

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Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_12_mag_162
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-08T17:06:11Z
ENA-LAST-UPDATE	2020-08-21T13:42:39Z
External Id	SAMEA7202162
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-08T17:06:11Z
INSDC last update	2020-08-21T13:42:39Z
INSDC status	public
Submitter Id	Chicken_12_mag_162
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Bacilli bacterium
completeness score	91.85
completeness software	CheckM
contamination score	2.41
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558287
scientific_name	uncultured Bacilli bacterium
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS3558287

BioProject: PRJEB33338 Metagenomics of chicken cecal contents
Retrieve all samples from this project

Chicken_12_mag_162
Chicken_12_mag_162

biosample
Fistularia commersonii isolate TSs1 cytochrome b (cytb) gene, partial cds; mitoc...
Fistularia commersonii isolate TSs1 cytochrome b (cytb) gene, partial cds; mitochondrial
gi|284448910|gb|GQ902023.1|

Nucleotide
Homo sapiens mRNA for RAB6A, member RAS oncogene family isoform a variant, clone...
Homo sapiens mRNA for RAB6A, member RAS oncogene family isoform a variant, clone: FCC126F01
gi|62898833|dbj|AK223551.1|

Nucleotide
Homo sapiens cDNA FLJ52284 complete cds, highly similar to Ras-related protein R...
Homo sapiens cDNA FLJ52284 complete cds, highly similar to Ras-related protein Rab-6A
gi|221043661|dbj|AK301534.1|

Nucleotide

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